Livres, brochures et rapports :
Ayres Hutter, J., J. Arsenault, S. Bekal, J. Brassard, C. Gariépy, C. Gaulin, C. Huot, A. Irace-Cima, A.-M. Lowe, D. Ramsay, K. Thivierge, P. Turgeon. Portrait des zoonoses entériques au Québec, INSPQ, 2020, 127 p.
Hongoh V., E. Rees, A. Massé, P. A. Leighton. Modélisation du risque de réincursion de la rage du raton laveur au Québec. Ministère des Forêts, de la Faune et des Parcs, 2020, 87p.
Simon, A., D. Bélanger, D. Berteaux, K. Hueffer, E. Rees, P. A. Leighton. Ecology of rabies in the Arctic fox (Vulpes lagopus), In R. Tinline and D. Gregory, editors. Taking the Bite out of Rabies: The Evolution of Rabies Management in Canada, University of Toronto Press, 2020, 672 p.
Publications :
Bernier-Gosselin, V., S. Dufour, J.R. Middleton. Association between species-specific staphylococcal intramammary infections and milk somatic cell score over time in dairy goats. Preventive Veterinary Medicine, 2020 Jan; 174:104815. doi: 10.1016/j.prevetmed.2019.104815
Bernier-Lachance, J., J. Arsenault, V. Usongo, E. Parent, J. Labrie, M. Jacques, F. Malouin, M. Archambault. Prevalence and characteristics of Livestock-Associated Methicillin-Resistant Staphylococcus aureus (LA-MRSA) isolated from chicken meat in the province of Quebec, Canada. PLOS One, 2020; 15(1), e0227183. doi: 10.1371/journal.pone.0227183
Borry, M., H. Carabin et collaborateurs. CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content. Peer J, 2020; 8:e9001. doi: 10.7717/peerj.9001
Dramé, O., D. Leclair, E.J. Parmley, A. Deckeert, B. Ouattara, A. Ravel. Antimicrobial resistance of Campylobacter in broiler chicken along the food chain across Canada. Foodborne Pathogens and Disease, 2020; 17(7). doi: 10.1089/fpd.2019.2752
de Lagarde, M., J. Arsenault, J.M. Fairbrother. Prevalence, risk factors, and characterization of multidrug resistant and ESBL/AmpC producing Escherichia coli in healthy horses in Quebec, Canada, in 2015-2016. Animals, 2020 Mar 20; 10(3):523. doi: 10.3390/ani10030523
Edge, T., N.H. Ogden et collaborateurs. The ecobiomics project: Advancing metagenomics assessment of soil health and freshwater quality in Canada. Science of the Total Environment, 2020; 710: 135906. doi: 10.1016/j.scitotenv.2019.135906
Ferraro, S., S. Buczinski, S. Dufour, M. Rousseau, J. Dubuc, J.P. Roy, A. Desrochers. Bayesian assessment of diagnostic accuracy of a commercial borescope and of trimming chute examinations for the diagnosis of digital dermatitis in dairy cows. Journal of Dairy Science, 2020; 103(4):3381-91. doi: 10.3168/jds.2019-17129
Journault, A.A., L. Richard, C. Aenishaenslin. Lyme Disease Prevention: A Content Analysis of Canadian Patient Group and Government Websites. Zoonoses and Public Health, 2020; 67(2): 177-185. doi: 10.1111/zph.12669
Kabera, F., S. Dufour, G.P. Keefe, M. Cameron, J.P. Roy. Evaluation of a quarter-based selective dry cow therapy using Petrifilm on-farm milk culture: A randomized controlled trial. Journal of Dairy Science, 2020. doi: 10.3168/jds.2019-17438
Kennang Ouamba, A.J., G. LaPointe, S. Dufour, D. Roy. Optimization of preservation methods allows deeper insights into changes of raw milk microbiota. Microorganisms. 2020; 8(3): 368. doi: 10.3390/microorganisms8030368
Lardé, H., S. Dufour, M. Archambault, D. Léger, D. Loest, J.P. Roy, D. Francoz. Assignment of Canadian Defined Daily Doses and Canadian Defined Course Doses for quantification of antimicrobial usage in cattle. Frontiers Veterinary Science, 2020;7. doi: 10.3389/fvets.2020.00010
Massé, J., S. Dufour, M. Archambault. Characterization of Klebsiella and Raoultella isolates obtained from dairy cattle clinical mastitis cases. Journal of Dairy Science, 2020; 103(4):3392-400. doi: 10.3168/jds.2019-17324
McClure, K., A. Gilbert, R. Chipman, E. Rees, K. Pepin. Variation in host home range size decreases rabies vaccination effectiveness by increasing the spatial spread of rabies virus. Journal of Animal Ecology, 2020; 89(6): 1375-1386. doi: 10.1111/1365-2656.13176
McGrew, K., H. Carabin, T. Garwe, S.R. Jafarzadeh, D.A. Drevets, Y.D. Zhao, M.B. Williams. Validity of ICD-based algorithms to estimate the prevalence of injection drug use among infective endocarditis hospitalizations in the absence of a reference standard. Drug and Alcohol Dependence 2020; 209: article 107906. doi: 10.1016/j.drugalcdep.2020.107906
McGrew, K.M., J.B. Homco, T. Garwe, Y.D. Zhao, D.A. Drevets, H. Carabin. Validity of ICD codes in identifying illicit drug use target conditions using medical record data as reference standard: a systematic review. Drug and Alcohol Dependence 2020; 208: Article 107825. doi: 10.1016/j.drugalcdep.2019.107825
Mediouni, S., M. Brisson, A. Ravel. Epidemiology of human exposure to rabies in Nunavik: incidence, the role of dog bites and their context, and victim profiles. BMC Public Health accepté mars 2020. Doi: 10.21203/rs.2.17363/v2
Ng, V., E.E. Rees, J. Niu, J.P. Gilbert, A. Vester A. A review of natural language processing algorithms developed to extract information for event-based surveillance systems. Canadian Communicable Disease Report 2020. (accepté)
Ngambo Domche, G., P. Valois, M. Canuel, D. Talbot, M. Tessier, C. Aenishaenslin, B. Bouchard, S. Briand. Telephone versus Web Panel Survey Modes for Adaptation to Climate Change Studies: Comparing Lyme Disease Preventive Behaviors and their Determinants. BMC Medical Research Methodology, 2020; 20(1):78. doi: 10.1186/s12874-020-00958-4
Niu, J., V. Ng, G. Penn, E. Rees. Temporal Histories of Epidemic Events (THEE): a Case Study in Temporal Annotation for Public Health. in Proceedings of the International Conference on Language Resources and Evaluation. Proceedings of the 12th Conference on Language Resources and Evaluation (LREC 2020), Marseille, 11–16 May 2020, p. 2223–2230
Ogden, N.H., S. Gasmi, J.K. Koffi, M. Barton, L.R. Lindsay, J.M. Langley. Lyme disease in children: Data from the Canadian Paediatric Surveillance Program. Ticks and Tick-borne Diseases, 2020; 11(2) 101347. doi: 10.1016/j.ttbdis.2019.101347
Park, S., D. Jung, S. Dufour, J. Ronholm. Draft Genome Sequences of 27 Staphylococcus aureus strains and 3 Staphylococci Species Isolated from Bovine Clinical Mastitis. Microbiology Resource Announcement, 2020 May 7; 9(19). pii: e00300-20. doi: 10.1128/MRA.00300-20
Pelletier, J., J.-P. Rocheleau, C. Aenishaenslin, F. Beaudry, G.D. Masson, L.R. Lindsay, N.H. Ogden, C. Bouchard, P.A. Leighton. Evaluation of fluralaner as an oral acaricide to reduce tick infestation in a wild rodent reservoir of Lyme disease. Parasites & Vectors, 2020; 13(1):1-9. doi: 10.1186/s13071-020-3932-7
Rocheleau, J.-P., S.O. Kotchi, J. Arsenault. Can local risk of West Nile virus infection be predicted from previous cases? A descriptive study in Quebec, 2011-2016. Can J Public Health, 2020; 111:229-238. doi: 10.17269/s41997-019-00279-0
Roy, J.P., M. Archambault, A. Desrochers, J. Dubuc, S. Dufour, D. Francoz, M.E. Paradis, M. Rousseau. New Quebec regulation on the use of antimicrobials of very high importance in food animals: Implementation and impacts in dairy cattle practice. Canadian Veterinary Journal, 2020; 61:193-6.
Zhao, N., K. Charland, M. Carabali, E. Nsoesie, M. Maher-Giroux, E. Rees, Y. Mengru, C. Balaguera Garcia, G. Ramirez Jaramillo, K. Zinser. Machine learning and dengue forecasting: Comparing random forests and artificial neural networks for predicting dengue burdens at the national sub-national scale in Colombia. bioRxiv 2020.01.14.906297; doi: 10.1101/2020.01.14.906297